YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSCL6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	28	0.93
Cytoplasmic	29	100	0.92
Transmembrane Helix	101	121	0.89
Non-Cytoplasmic	122	157	0.94
Transmembrane Helix	158	177	0.95
Cytoplasmic	178	374	0.99
Transmembrane Helix	375	395	0.90
Non-Cytoplasmic	396	426	0.88
Transmembrane Helix	427	447	0.88
Cytoplasmic	448	466	0.82
Transmembrane Helix	467	486	0.94
Non-Cytoplasmic	487	506	0.91
Transmembrane Helix	507	528	0.67
Cytoplasmic	529	575	0.75
Transmembrane Helix	576	602	0.82
Non-Cytoplasmic	603	625	0.76
Transmembrane Helix	626	645	0.84
Cytoplasmic	646	778	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLADIGLA AAINILSALI FLLLFAILRI QPFNDRVYFP KWYLKGVRSS PVNSGAFVSK  60
   61 IMNLDFRSYV RFLNWMPDAL KMPEPELIDH AGLDSAVYLR IYLIGLKIFG PIALLSWSIL 120
  121 VPVNWTSDGL QLAKLRNVTS SNIDKLSISN VERGSDRFWA HLVMAYAFTF WTCYVLMKEY 180
  181 EKIAAMRLSF LQSEKRRADQ FTVLVRNVPP DSDESISENV QHFFLVNHPD HYLTHQVVYN 240
  241 ANELAKLVED KKKMQNWLDY YQLKYTRNKE QRPRVKMGFL GLWGKKVDAM DHYTAEIEKL 300
  301 SEQIMEERKR IKKDDKSVMQ AAFVSFKTRW GAAVCAQTQQ TKNPTEWLTE WAPEAREMYW 360
  361 PNLAMPYVSL TVRRFVMHIA FFFLTFFFII PIAFVQSLAS IEGIEKSAPF LSPIVKNKLM 420
  421 KSLIQGFLPG IVLKLFLIFL PTILMIMSKF EGFISISSLE RRAAFRYYIF NLVNVFLGSV 480
  481 ITGSAFEQLD SFLKQSANDI PRTVGVAIPI KATFFITYIM VDGWAGVAGE IFRLKPLVIF 540
  541 HLKNFFFVKT EKDREEAMDP GQIDFYATEP RIQLYFLLGL VYAPVTPVLL PFIIFFFGFA 600
  601 YLVFRHQIIN VYNQKYESAG AFWPDVHGRI ISALIISQIL LLGLMSTKGK VQSTPFLLVL 660
  661 AILTFGFHRF CKGRYESAFV INPLQEAMIK DTLERAREPN LNLKGFLQNA YVHPVFKDEE 720
  721 DSDEEGLIED SDDEDCVVVQ TKRQRSRRTT VASSNASRGS SQSTPFNQLD LGKGKPET