YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR49_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.85
Transmembrane Helix	83	101	0.90
Non-Cytoplasmic	102	109	0.72
Transmembrane Helix	110	133	0.74
Cytoplasmic	134	138	0.57
Transmembrane Helix	139	159	0.88
Non-Cytoplasmic	160	190	0.73
Transmembrane Helix	191	209	0.78
Cytoplasmic	210	229	0.90
Transmembrane Helix	230	252	0.91
Non-Cytoplasmic	253	257	0.85
Transmembrane Helix	258	279	0.90
Cytoplasmic	280	377	0.96
Transmembrane Helix	378	398	0.87
Non-Cytoplasmic	399	418	0.83
Transmembrane Helix	419	439	0.90
Cytoplasmic	440	455	0.86
Transmembrane Helix	456	476	0.91
Non-Cytoplasmic	477	504	0.89
Transmembrane Helix	505	527	0.91
Cytoplasmic	528	537	0.90
Transmembrane Helix	538	557	0.92
Non-Cytoplasmic	558	584	0.86
Transmembrane Helix	585	605	0.93
Cytoplasmic	606	624	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASEIKSPV SVPETPGSSS VHHRKQLSVF FIESDNRRLA LGRGYTGGTT PVNIHGKPIA  60
   61 NLSKTGGWIA AFFIFGNEMA ERMAYFGLSV NMVAFMFYVM HRPFESSSNA VNNFLGISQA 120
  121 SSVLGGFLAD AYLGRYWTIA IFTTMYLVGL IGITLGASLK MFVPDQSNCG QLSLLLGNCE 180
  181 EAKSWQMLYL YTVLYITGFG AAGIRPCVSS FGADQFDEKS KDYKTHLDRF FNFFYLSVTL 240
  241 GAIIAFTLVV YVQMELGWGM AFGTLAVAMG ISNALFFAGT PLYRHRLPGG SPLTRVAQVL 300
  301 VAAFRKRNAA FTSSEFIGLY EVPGLKSAIN GSRKIPHSND FIWLDKAALE LKEDGLEPSP 360
  361 WKLCTVTQVE EVKILIRLIP IPTCTIMLSL VLTEYLTLSV QQAYTLNTHI QHLKLPVTCM 420
  421 PVFPGLSIFL ILSLYYSVFV PITRRITGNP HGASQLQRVG IGLAVSIISV AWAGLFENYR 480
  481 RHYAIQNGFE FNFLTQMPDL TAYWLLIQYC LIGIAEVFCI VGLLEFLYEE APDAMKSIGS 540
  541 AYAALAGGLG CFAATILNNI VKAATRDSDG KSWLSQNINT GRFDCLYWLL TLLSFLNFCV 600
  601 FLWSAHRYKY RAIESEEDKS SAVL