YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9758222
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	27	0.90
Non-Cytoplasmic	28	54	0.87
Transmembrane Helix	55	75	0.94
Cytoplasmic	76	99	0.91
Transmembrane Helix	100	126	0.87
Non-Cytoplasmic	127	157	0.88
Transmembrane Helix	158	181	0.76
Cytoplasmic	182	196	0.73
Transmembrane Helix	197	221	0.89
Non-Cytoplasmic	222	233	0.88
Transmembrane Helix	234	255	0.89
Cytoplasmic	256	264	0.81
Transmembrane Helix	265	284	0.81
Non-Cytoplasmic	285	287	0.66
Transmembrane Helix	288	307	0.76
Cytoplasmic	308	529	0.84
Transmembrane Helix	530	552	0.93
Non-Cytoplasmic	553	572	0.90
Transmembrane Helix	573	594	0.93
Cytoplasmic	595	703	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNMRSLVKT LMVVLFLGWI LVWIMISTNL FKSKWTPKLS KYLNTTYFGP QGTNLVLLTV  60
   61 PMMFIAVLSC VYLHIRNKLS QSYLYECREW KLKRIMGRVI MVMNPLGIVT ATELTFSLLF 120
  121 VALLAWSLYN YLYLSYHVHL HNDDNAKIWQ AKFRAFGLRI GYVGNICWAF LFFPVTRAST 180
  181 ILPLVGLTSE SSIKYHIWLG HVSNFCFLVH TVVFLIYWAM INKLMETFAW NPTYVPNLAG 240
  241 TIAMVIGIAM WVTSLPSFRR KKFEIFFYTH HLYGLYIVFY VIHVGDSWFC MILPNIFLFF 300
  301 IDRYLRFLQS TKRSRLVSAR ILPSDNLELT FSKTPGLHYT PTSILFLHVP SISKIQWHPF 360
  361 TITSSSNLEK DTLSVVIRRQ GSWTQKLYTH LSSSIDSLEV STEGPYGPNS FDVSRHNSLI 420
  421 LVSGGSGITP FISVIRELIS QSQNKSTKLP DVLLVCSFKH YHDLAFLDLI FPLDMSASDI 480
  481 SRLNLRIEAY ITREDKKPET TDDHRLLQTK WFKPQPLDSP ISPVLGPNNF LWLGVVILSS 540
  541 FVMFLLLIGI VTRYYIYPVD HNTGSIYNFS YRGLWDMFLG SACIFISSSV VFLWRKKQNK 600
  601 EGDKEFKNQV QSVEFQTPTS SPGSWFHGHE RELESVPYQS IVQATSVHFG SKPNLKKILL 660
  661 EAEGSEDVGV MVCGPRKMRH EVAKICSSGL AKNLHFEAIS FNW