YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25366911, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVYRKLIW IRDPLARLKR HVSSHSGFRF FRDRKWMFPF LASLVLSVTL LMSVLYVQLE  60
   61 TSYVEEPLPF DNLSEETNDY FVESQLRMSL NSTLDSTSSE VPRLAYLISG TKGDSLRMMR 120
  121 TLQAVYHPRN QYVLHLDLEA PPKERLELAM SVKSDQTFRE VENVRVMSQS NLVTYKGPTM 180
  181 IACTLQAVAI LLKESLDWDW FINLSASDYP LVTQDDMLYV FANLSRNVNF IEHMKLTGWK 240
  241 LNQRAKSIIV DPGLYLSKKT EIAWTTQHRS LPTSFTLFTG SAWVVLTRSF LEYSILGWDN 300
  301 FPRTILMYYT NFVSSPEGYF HTLICNTEEF KSTAIGHDLH YIAWDYPPKQ HPNSLSMKDF 360
  361 DKMVKSKAPF ARKFHKNDPV LDKIDRELLG RTHRFSSGAW CIGSSENGAD PCSVRGDDSA 420
  421 LKPGPGAERL KELLQTLLSD EFRIKQCS

Type	Start	End	Confidence
Cytoplasmic	1	35	0.70
Transmembrane Helix	36	57	0.67
Non-Cytoplasmic	58	448	0.97