YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9279583
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKDNDSGSG SNPGQVSNYL IVRPHRGGYI DLFRYGVRDD QTSKAKFLEM PDNREWSTIT  60
   61 IDEEAEDHRW VIVVSILVRK IIRLLRTPME FTGFVVDFFL NLFSANGGFF GLLLRLIQAK 120
  121 VVIPERGSVT FVSTIGQLDG RISLYKEWNF VEHLEGIDSV DSGRVKIELG SRGLMDLCVM 180
  181 ASKLAYENAK MNLVEFLDCW NDYQKQMSTQ VFVFTDKQKD ANLIVISFRG TEPFDADDWG 240
  241 TDFDYSWYEV PNVGKLHMGF LEAMGLGNRD DTTTFHYNLF EQTSSEEENS KKNLLDMVER 300
  301 SAYYAVRVIL KRLLSEHENA RFVVTGHSLG GALAILFPTL LVLNEETEIM KRLLGVYTFG 360
  361 QPRIGNREVG LFMKAQLNQP VDRYFRVVYC NDIVPRLPYD DKTFLYKHFG LCLFYDSFYN 420
  421 ETKAEDEPDP NPYGLRYKIL GHVIAVWELV RGLTMGYTHG PDYKEGWFRI LFRLMGLVIP 480
  481 GLSDHCMTDY VNSVRLGPDN ELQMSSL

Type	Start	End	Confidence
Cytoplasmic	1	90	0.58
Transmembrane Helix	91	113	0.56
Non-Cytoplasmic	114	507	0.76