YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B3GTD_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPKLFHA RPSFFTRRST PLIVFTSLAI GLTGFLFGLS TILFPGLRLS GRSCLTNLPP  60
   61 KTVKIVWDVA GNSIVNGEVK RHKVMGFVGI QTGFRSAGRR RALRNTWMPS DPEGLRRLEE 120
  121 STGLAIRFII GKTKDEAKMV ELRSEVAMYD DFILLDIEEE YSKLPYKTLA FFKAAYALYD 180
  181 SEFYVKADDD IYLRPDRLSL LLAKERGHSQ TYLGCMKKGP VFTDPKLKWY EPLADLLGKE 240
  241 YFLHAYGPIY ALSADVVTSL VALKNNSFRM FSNEDVTIGA WMLAMNVNHE NLHTLCEPEC 300
  301 SPYSIAVWDI PKCSGLCNPE KRMLELHMLE SCSKSPTLPS DDE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	43	0.88
Non-Cytoplasmic	44	343	0.97