YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GSXL1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVITSRAR HVAVIGLGAA GLVAVRELRR EGHTVIGFER EKHVGGLWVY TDRVDSDSVS  60
   61 VDPDRTIVHS SIYQSLRTNL PRECMGYSDF PFVTRSSDGD PRRYPDHREV LMYLQDFAKE 120
  121 FKIEDMIRFE TEVLCVEPSP ENNRKWRVQF KSSNGVSGEE IFDAVVVCNG HFTEPRLAHI 180
  181 PGIESWPGKQ IHSHNYRIPD PFKDEVVIVI GSQASGNDIS TDIATIAKEV HISSKMVASD 240
  241 SYGCYDNLRI HPTIYRARED GSVVFRNGKV VFADAIVHCT GYKYHFPFLK TSGYVTVEDN 300
  301 RVGPLYKHVF PPALAPGISF IGLPFMGLQF FMFEIQSKWV ASVLSGRVKL PAEDKMMEEA 360
  361 VAFYSKLEDL GIPKRYTHFL TDPRGNPMLG TFKPEDAVVI SQSDYFNWIA KQCGCTSIER 420
  421 WRERLYNVAI KKVFFGGDSY RDRWDDDQLI EEVYREFAKL KPNQDCSS

Type	Start	End	Confidence
Signal Peptide	1	24	0.76
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	468	0.82