YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25292646, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKSTVFPIC CLLFALFDRG NALYGSSSPV LQLTPSNFKS KVLNSNGVVL VEFFAPWCGH  60
   61 CQSLTPTWEK VASTLKGIAT VAAIDADAHK SVSQDYGVRG FPTIKVFVPG KPPIDYQGAR 120
  121 DAKSISQFAI KQIKALLKDR LDGKTSGTKN GGGSSEKKKS EPSASVELNS SNFDELVTES 180
  181 KELWIVEFFA PWCGHCKKLA PEWKKAANNL KGKVKLGHVN CDAEQSIKSR FKVQGFPTIL 240
  241 VFGSDKSSPV PYEGARSASA IESFALEQLE SNAGPAEVTE LTGPDVMEDK CGSAAICFVS 300
  301 FLPDILDSKA EGRNKYLEML LSVADKFKKD PYGFVWVAAG KQPDLEKRVG VGGYGYPAMV 360
  361 ALNAKKGAYA PLKSGFEVKH LKDFVKEAAK GGKGNLPIDG TMEIVKTEAW DGKDGEVVDA 420
  421 DEFSLEDLMG NDDEASTESK DDL

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	443	0.99