YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	38	0.87
Non-Cytoplasmic	39	68	0.88
Transmembrane Helix	69	92	0.90
Cytoplasmic	93	100	0.92
Transmembrane Helix	101	121	0.95
Non-Cytoplasmic	122	126	0.89
Transmembrane Helix	127	149	0.83
Cytoplasmic	150	163	0.82
Transmembrane Helix	164	187	0.89
Non-Cytoplasmic	188	213	0.92
Transmembrane Helix	214	233	0.96
Cytoplasmic	234	294	0.98
Transmembrane Helix	295	313	0.94
Non-Cytoplasmic	314	343	0.93
Transmembrane Helix	344	367	0.88
Cytoplasmic	368	376	0.83
Transmembrane Helix	377	397	0.93
Non-Cytoplasmic	398	405	0.83
Transmembrane Helix	406	428	0.86
Cytoplasmic	429	442	0.78
Transmembrane Helix	443	464	0.80
Non-Cytoplasmic	465	471	0.64
Transmembrane Helix	472	490	0.90
Cytoplasmic	491	516	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANEEQGSIL KALDVAKTQW YHVTAVVVSG MGFFTDSYDL FVISLITKLL GRIYYQVPGS  60
   61 SSPGSLPDGI SAAVSGVAFA GTFIGQIFFG CLGDKLGRKR VYGLTLLIMT ICSICSGLSL 120
  121 GRDPKTVMVT LCFFRFWLGF GIGGDYPLSA TIMSEYSNKR TRGAFIAAVF GMQGIGILAA 180
  181 GAVSLLVSAV FESKFPSRAY ILDGAASTVP QADYVWRIIL MVGALPALLT YYWRMKMPET 240
  241 ARYTALVSKN AEQAALDMTK VLNVDIEASA AKNDQARVSS DEFGLFSMKF LRRHGLHLLG 300
  301 TASTWFLLDI AFYSQNLFQK DIFTTIGWLP SAKTMNAIQE LYMIAKAQTI IACCSTVPGY 360
  361 FFTVGFIDYM GRKKIQIMGF AMMTIFMLSL AIPYHHWTLP ANRIGFVVLY SFTFFFSNFG 420
  421 PNATTFIVPA EIFPARIRST CHGISAASGK AGAMVGSFGF SALVKALGMS NTLYIMAGIN 480
  481 LLGLLLTFTI PETNGKSLEE LSGETEPEKI KEKIVV