YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|8978340
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNFWFAIFF FLLTCAPPSP LSYASTVTLS RRLLYDYESP LPLPLSPISP PFFPLESSPP  60
   61 SPPPPLPPTP PTTFAVFPTF PANISALVLP RSSKPHHTSP TLLLPALSAV LVIATVIGLA 120
  121 LFLYGRHRGQ TRHLKNSHCS SSNTSSYGDE QSHITTNFNM AATTSPSEVF YLNTEESDHI 180
  181 RTGGTFFLKQ DSPEIRPLPP LPPRSFHHNN YETEVNEEDE EEEEDVFFSP MASLPGSANS 240
  241 SPSHSCSSSC SGWVSPARSF SITMSPPNPR YSDATNLQSP SPERLRVRKN YNGNGSSSLR 300
  301 MFSFWNQNMG FGFPRISSAS TSPDRGFIRT PLSSLYSSVS TSPDGLFRKF LDSSPPIWND 360
  361 FSRNVKSVLL SHTASSRRDF VINIGESSSQ QSKVPALPPP TRPPPLVPPS QPFVVQNDVK 420
  421 KQSFSDQPPK QLHWERLRSS SSNKEMVETM FIANSSNPRD LPIQNQVLDP RKAQNIATLL 480
  481 QLLNLSTKDV CQALLDGDCD VLGAELLECL SRLAPSKEEE RKLKSFSDGS EIGPAERFLK 540
  541 ELLHVPFVFK RVDALLFVAN FHSEIKRLRK SFSVVQVACE ELRNSRMFSI LLEAILKTGN 600
  601 MMSVRTNRCG DADAFKLDTL LKLVDVKGLD GRSSLLHFVV QEMMKSEGSV RALEGIRNLN 660
  661 TELSNVKKSA DIEYGVLRSN VSRICQGLKN IEALLLLSEE SGSYGDQWLK FKERMTRFLK 720
  721 TAAEEIVKIK IRESSTLSAL EEVTEQFHGD ASKEGHTMRI FMIVRDFLSV LDQVCKEMGD 780
  781 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle