YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6466940
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	212	0.96
Transmembrane Helix	213	232	0.94
Cytoplasmic	233	241	0.78
Transmembrane Helix	242	267	0.85
Non-Cytoplasmic	268	280	0.80
Transmembrane Helix	281	299	0.90
Cytoplasmic	300	317	0.88
Transmembrane Helix	318	336	0.95
Non-Cytoplasmic	337	344	0.76
Transmembrane Helix	345	363	0.94
Cytoplasmic	364	382	0.88
Transmembrane Helix	383	402	0.97
Non-Cytoplasmic	403	457	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYSVSIII FVLIALSTIV NAQQAATDSC NSTLPLNDLT FNTSLLQCTE AWTPQNFILR  60
   61 YARTAENTWS FILSAPDSSA FIGIGFSTNG QMIGSSAIVG WIPSDGGSGT VKPYLLGGKS 120
  121 PGEVNPDQGD LTIVNGSLKI ESVSSRLYMR FQLTATLPRQ SLLYAVGPAG FFPSSPDFRL 180
  181 REHRFVTTTT INYNTGSQSV VKVSPHSKLK KTHGLMNMFG WGILIIVGAI VARHMKQWDP 240
  241 TWFYAHIALQ TTGFLLGLTG VICGLVLENR LKANNVSKHK GLGITILVMG VLQMLALLAR 300
  301 PDKQSKYRKY WNWYHHNIGR LLIILAISNI FYGIHLAKAG TSWNGGYGFA VAVLALTAIG 360
  361 LEVRKFLKKN WKKKKKEMLR TRLLWFTLGF SVTGGSIAHI VWRDLYAERF AISSDMKEKF 420
  421 SALEGRVSGL ESGGYENPNP AQVSSFSTSL PPFVTMI