YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9759032
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.94
Transmembrane Helix	127	150	0.81
Non-Cytoplasmic	151	175	0.84
Transmembrane Helix	176	198	0.92
Cytoplasmic	199	208	0.87
Transmembrane Helix	209	228	0.93
Non-Cytoplasmic	229	266	0.92
Transmembrane Helix	267	284	0.86
Cytoplasmic	285	350	0.71
Transmembrane Helix	351	374	0.80
Non-Cytoplasmic	375	390	0.83
Transmembrane Helix	391	414	0.81
Cytoplasmic	415	425	0.83
Transmembrane Helix	426	446	0.92
Non-Cytoplasmic	447	452	0.77
Transmembrane Helix	453	470	0.95
Cytoplasmic	471	480	0.75
Transmembrane Helix	481	498	0.87
Non-Cytoplasmic	499	504	0.46
Transmembrane Helix	505	525	0.75
Cytoplasmic	526	547	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSCICSL YSSLLLVMGR EKTLCKSWSD MKKHLNDTVS KSFIGRFFKL EARKTTFTTE  60
   61 LRAATATFLT MAYIITVNAN ILADSGATCS INDCSTVASS SPPGPECVLG SNPGYEQCIS 120
  121 RVKKDLVVAT SLSAMVGSLA MGLLANLPFG LAPGMGANAY IAYNVVGFRG SGSISYHTAM 180
  181 AIVLLEGCAF LAVSALGLRG KLARLIPQTV RLACAVGIGM FIAFVGLQMN QGIGLVGPDK 240
  241 STLVTLTACA ETDPVTGACL GGKMKSPTFW LAVVGFLITS FGLMKNVKGS MIYGIVFVTA 300
  301 ISWIRGTQVT IFPHTPLGDS NYNYFTKIVD FHKIQSTLGA ISFTEFRKSE VWVAFATLFY 360
  361 VDLLGTTGVL YTMAEIGGFV EDGKFEGEYA AYLVDAGSSV VGSALGVTTT ATFVESSAGL 420
  421 KEGGKTGLTA VIVGLYFLAS MFFTPLVTNV PRWAVGPSLV MVGVMMMGVV KDIRWGETKE 480
  481 AVTAFVTILL MPLTYSIANG IIAGIGIYLA LSMYDVVLGV AKWLNGVRKR VMREHNQVSS 540
  541 VATVEIV