YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.96
Transmembrane Helix	45	63	0.92
Non-Cytoplasmic	64	91	0.89
Transmembrane Helix	92	111	0.93
Cytoplasmic	112	129	0.92
Transmembrane Helix	130	151	0.89
Non-Cytoplasmic	152	159	0.78
Transmembrane Helix	160	181	0.92
Cytoplasmic	182	188	0.85
Transmembrane Helix	189	209	0.93
Non-Cytoplasmic	210	224	0.86
Transmembrane Helix	225	245	0.93
Cytoplasmic	246	264	0.88
Transmembrane Helix	265	287	0.93
Non-Cytoplasmic	288	306	0.93
Transmembrane Helix	307	330	0.81
Cytoplasmic	331	335	0.69
Transmembrane Helix	336	358	0.87
Non-Cytoplasmic	359	364	0.84
Transmembrane Helix	365	385	0.93
Cytoplasmic	386	393	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNQQPIFQ TKPPEQFVQI PINIERDSST TRMNQTGNTI RKPNHWPTIT ISIIFVIIGQ  60
   61 SIAKLLENFY YDKTNRSEYN ENRQNDGVWT QSLLQTVGFP LLLLPFLIFI TKNKRNHHQQ 120
  121 PPITSDSIHL KSLAVIYICI GIIMSVQGRL AAMGKLEIPF GVFTLIYTAQ LFFTPIFAAF 180
  181 INKIKFNRWV VISVILAIIT GALTLSSSFG GEPDEAEENY ARGSWAALFA GICFALLLCN 240
  241 IQNVFDSYIF KRTESTNQKP SFASVFEVII FSSLVATIIS VVGLLIAGEQ HDLKREMNGF 300
  301 SKGKGSYVMA MVGQAVSWQV YWVGIVGLVY SVSSVLSNVI SVITWPIVSV LVVIFFNFMD 360
  361 DEFDAFKGVA LVTAVLSAAA YFFRLHKDNR MAY