YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIC21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSLLLPPAS SSGVSAVALR PGFQHSFNHQ SLSTRSLPLF NPLLLAPKKK TTISSYQSPP  60
   61 SLSVYGFQIG GSKPSFTPST VAFSYPTSPS SVPGDNEVDK AKLAQVAKRL EKTSRYFKRL 120
  121 GSIGFWGQLV STVVAAVILS FSIVVTGKPT SPATFYATAS GIAAAFVSVF WSFGYIRLSE 180
  181 RLRRTSIDPA KAPPRADVVK GLRSGIMVNI LGMGSALLGM QATVGFLVAK ALTTSANPFY 240
  241 QGVSQGYSPV LALDVFLVQA SANTLLSHFL GLVCSLELLR SVTVPNSESV VVPKVA

Type	Start	End	Confidence
Cytoplasmic	1	123	0.97
Transmembrane Helix	124	145	0.94
Non-Cytoplasmic	146	152	0.88
Transmembrane Helix	153	175	0.92
Cytoplasmic	176	204	0.94
Transmembrane Helix	205	229	0.82
Non-Cytoplasmic	230	249	0.87
Transmembrane Helix	250	272	0.73
Cytoplasmic	273	296	0.80