YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25302173, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.50
Transmembrane Helix	12	31	0.86
Cytoplasmic	32	38	0.46
Transmembrane Helix	39	58	0.80
Non-Cytoplasmic	59	65	0.50
Transmembrane Helix	66	85	0.64
Cytoplasmic	86	93	0.95
Transmembrane Helix	94	116	0.93
Non-Cytoplasmic	117	123	0.72
Transmembrane Helix	124	144	0.94
Cytoplasmic	145	158	0.90
Transmembrane Helix	159	179	0.93
Non-Cytoplasmic	180	195	0.85
Transmembrane Helix	196	219	0.87
Cytoplasmic	220	238	0.84
Transmembrane Helix	239	264	0.81
Non-Cytoplasmic	265	280	0.74
Transmembrane Helix	281	300	0.73
Cytoplasmic	301	308	0.45
Transmembrane Helix	309	331	0.81
Non-Cytoplasmic	332	338	0.39
Transmembrane Helix	339	360	0.81
Cytoplasmic	361	371	0.48
Transmembrane Helix	372	393	0.90
Non-Cytoplasmic	394	618	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPHQEVNEE EASLFDFLWL LLASVIFVPL FQKIPGGSPV LGYLAAGILI GPYGLSIIRN  60
   61 VHGTRAIAEF GVVFLLFNIG LELSVERLSS MKKYVFGLGS AQVLVTAAVV GLLAHYVAGQ 120
  121 AGPAAIVIGN GLALSSTAVV LQVLQERGES TSRHGRASFS VLLFQDLAVV VLLILIPLIS 180
  181 PNSSKGGIGF QAIAEALGLA AVKAAVAITA IIAGGRLLLR PIYKQIAENR NAEIFSANTL 240
  241 LVILGTSLLT ARAGLSMALG AFLAGLLLAE TEFSLQVESD IAPYRGLLLG LFFMTVGMSI 300
  301 DPKLLLSNFP VIVGTLGLLI VGKTMLVVIM GKLFGISIIS AIRVGLLLAP GGEFAFVAFG 360
  361 EAVNQGIMSP QLSSLLFLVV GISMAITPWL AAGGQLIASR FELHDVRSLL PVESETDDLQ 420
  421 GHIIICGFGR VGQIIAQLLS ERLIPFVALD VSSDRVTIGR SLDLPVYFGD AGSKEVLHKI 480
  481 GAGRACAAVV ALDAPGANYR CVWALSKFYP NVKTFVRAHD VVHGLNLEKA GATAVVPETL 540
  541 EPSLQLAAAV LAQAKLPTSE IANTINEFRT RHLSELTELC EASGSSLGYG YSRTSKPKPQ 600
  601 PSDASGDNQI IEGGTVVI