YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSRSNLIGL INFFTFLLSI PILGGGIWLS SRANSTDCLR FLQWPLIIIG ISIMVISLAG  60
   61 IAGACYQNKF LMWLYLFTMF FVIAALIGFT IFAYVVTDKG SGRFVMNRRY LDYYLNDYSG 120
  121 WLKDRVTDNG YWRDIGSCVR DSGVCKKIGR DLNGVPETAH MFYFRNLSPV ESGCCKPPTD 180
  181 CGYTYVNETV WIPGGEMVGP NPDCMLWNND QRLLCYQCSS CKAGVLGSLK KSWRKVSVIN 240
  241 IVVVIILVIF YVIACAAYQN VKRMYNDEPV GEARMTNLIL VIFKFKEILV QFFFGIVFLL 300
  301 LFNGLMVCCC NDKFAFSVFF FGYVTYA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.86
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	40	0.86
Transmembrane Helix	41	64	0.90
Non-Cytoplasmic	65	72	0.75
Transmembrane Helix	73	96	0.93
Cytoplasmic	97	235	0.92
Transmembrane Helix	236	258	0.90
Non-Cytoplasmic	259	287	0.88
Transmembrane Helix	288	310	0.88
Cytoplasmic	311	327	0.83