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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSL4_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDSTDQRR DFVVRIDGED NGDSEKFWRE SSINFWHNDK SSKPPGGEED DGSFDFMRRS  60
   61 SEKSEEPDPP SKLINQFLNK QKASGDEISL DMEANMPELQ KNTVPPLSST AVSGSASPVT 120
  121 APVTASYRNG TGDAIRRRQN RVTLSPSVKD GDSSEDEENR VDGSEVVKCT SNRSTMRTKT 180
  181 LMKMKTRSRL MDPPTPTYPD MVSGRTPRSG NLNPGFSGRN TKPGTPNQGG SKDLEEEEDP 240
  241 FSEEDLPEGL RKEKICVWVI IEWIFLILII ASLICSLVIP YLRGKTLWDL ALWKWEVMVL 300
  301 VLICGRLVSS WIVKLFVYFV ESNFLWRKKV LYFVYGIRKP VQNCLWLGLV LIAWHFLFDK 360
  361 KVEREMRSTV LKYVTKVLIC LLVAVIIWLI KTLLVKVLAS SFHMSTYFDR IQESLFTQYV 420
  421 IETLSGPPRI EIHIEEEKVA NDVKTFEIVG RKLSPLGPKA VSSPPQVTVG SGRLQKSPSR 480
  481 VGKSPVLSRS GSKKEGGEEG IRIDHLQRMN TKNVSAWKMK KLMNVIKKGT LSTLDEQIQD 540
  541 TTTQEDDKAT QIRSEFEAKL AARKIFQNVA EPGSRYIYME DFMRFLSEDE SERAMDLFEG 600
  601 ASECHKISKS CLKNWVVNAF RERRALALTL NDTKTAVNRL HRIVDVLVSI VILIIWLLIL 660
  661 GIATTKFLLV ISSQLLLVVF VFGNSCKTIF EAVIFVFVMH PFDVGDRCEI DGVQMIVEEM 720
  721 NILTTVFLRF DNQKIVYPNS LLGTKPIANY YRSPDMQDAI EFFVHIATPP EKTTALRQRI 780
  781 LSYVDNKKDH WHPSPMIVFR DMCGLNSVKI AMWPTHKMNH QNMGERYVRR GQLLEEIGRL 840
  841 CRELDIEYRL YPLNINVKSL PAATPITSDR IPPSWNQQRS V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle