YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.69
Transmembrane Helix	45	67	0.86
Non-Cytoplasmic	68	72	0.58
Transmembrane Helix	73	96	0.73
Cytoplasmic	97	119	0.56
Transmembrane Helix	120	142	0.78
Non-Cytoplasmic	143	150	0.46
Transmembrane Helix	151	174	0.88
Cytoplasmic	175	212	0.59
Transmembrane Helix	213	236	0.82
Non-Cytoplasmic	237	261	0.60
Transmembrane Helix	262	280	0.63
Cytoplasmic	281	286	0.36
Transmembrane Helix	287	313	0.79
Non-Cytoplasmic	314	362	0.69
Transmembrane Helix	363	384	0.93
Cytoplasmic	385	418	0.91
Transmembrane Helix	419	440	0.94
Non-Cytoplasmic	441	447	0.77
Transmembrane Helix	448	469	0.94
Cytoplasmic	470	530	0.87
Transmembrane Helix	531	553	0.88
Non-Cytoplasmic	554	578	0.79
Transmembrane Helix	579	596	0.42
Cytoplasmic	597	602	0.52
Transmembrane Helix	603	623	0.92
Non-Cytoplasmic	624	645	0.52
Transmembrane Helix	646	670	0.82
Cytoplasmic	671	681	0.60
Transmembrane Helix	682	704	0.89
Non-Cytoplasmic	705	741	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEIVEDSSR VMEIEGQNDD LDRCVVEEVE LTVPKTDDPT LPVLTFRMWT LGLGACIILS  60
   61 FINQFFWYRQ MPLTISGISA QIAVVPLGHL MAKVLPTRMF LEGSKWEFSM NPGPFNVKEH 120
  121 VLITIFANSG AGTVYATHIL SAIKLYYKRS LPFLPAFLLM ITTQFLGFGW AGLFRKHLVE 180
  181 PGEMWWPSNL VQVSLFSALH EKEKKKKGGM TRIQFFLIVL VTSFAYYILP GYLFTMITSI 240
  241 SWICWLGPKS VLVHQLGSGE QGLGIGAIGI DWATISSYLG SPLASPLFAT INVTIGFVVI 300
  301 MYVATPICYW LNIYKAKTYP IFSSGLFMGN GSSYDVLSII DKKFHLDRDI YAKTGPINMS 360
  361 TFFAVTYGLG FATLSATIVH VLLFNGRDLW KQTRGAFQRN KKMDFHTRIM KKNYREVPMW 420
  421 WFYVILVLNI ALIMFISFYY NATVQLPWWG VLLACAIAVF FTPLIGVIAA TTNQEPGLNV 480
  481 ITEYVIGYLY PERPVANMCF KVYGYISMTQ ALTFIQDFKL GLYMKIPPRS MFMAQVVGTL 540
  541 VSVVVYTGTA WWLMVDIPHL CDKSLLPPDS EWTCPMDRVF FDASVIWGLV GPRRMFGNLG 600
  601 EYAAINWFFL VGAIAPFFVW LATKAFPAHK WISKIHFPVI LGATSMMPPA MAVNFTSWCI 660
  661 VAFVFGHFLY KYKRQWWKKY NYVLSGGLDA GTAFMTILIF LSVGRKGIGL LWWGNADDST 720
  721 NCSLASCPTA KGVIMHGCPV L