YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL41_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNDRDHRR FNSDHHSFWP NPSTYDLNSK IMLAAVASLS GVILIVFALH LYARFVLRRR  60
   61 REAFRGLPVI FRHPFEMPKR GLNPTVIASL PTFTVGATDG VAASATECAV CLSVLKEQDK 120
  121 ARELPNCKHI FHVDCVDTWL TTCSTCPVCR TEVEPRPRLE PEPREGPVGT APQLLVETRL 180
  181 NLTVEAASSS SSDNKTVVSP ASRLNSFRKI LTRERSSNRI NHSCPDQDRV ADLERH

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.86
Transmembrane Helix	31	53	0.93
Cytoplasmic	54	236	0.83