YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHSA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.87
Transmembrane Helix	36	56	0.77
Non-Cytoplasmic	57	61	0.79
Transmembrane Helix	62	81	0.93
Cytoplasmic	82	92	0.75
Transmembrane Helix	93	114	0.88
Non-Cytoplasmic	115	141	0.69
Transmembrane Helix	142	166	0.80
Cytoplasmic	167	172	0.57
Transmembrane Helix	173	197	0.87
Non-Cytoplasmic	198	214	0.55
Transmembrane Helix	215	229	0.53
Cytoplasmic	230	248	0.76
Transmembrane Helix	249	272	0.88
Non-Cytoplasmic	273	297	0.80
Transmembrane Helix	298	321	0.67
Cytoplasmic	322	341	0.84
Transmembrane Helix	342	362	0.91
Non-Cytoplasmic	363	367	0.76
Transmembrane Helix	368	389	0.89
Cytoplasmic	390	401	0.91
Transmembrane Helix	402	426	0.86
Non-Cytoplasmic	427	430	0.67
Transmembrane Helix	431	449	0.91
Cytoplasmic	450	482	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDYNMNEFA YGNLYDDDDG DVGGSSKEGN NSIQKVSMLP LVFLIFYEVS GGPFGAEGSV  60
   61 NAAGPLLALL GFVIFPFIWC IPEALITAEM STMFPINGGF VVWVSSALGT FWGFQVGWMK 120
  121 WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF 180
  181 MGVFSMLPFA VMSLVSIPQL EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA 240
  241 NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV 300
  301 QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS 360
  361 GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY KIPVGTVGSI LICVPPIVLI 420
  421 CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL 480
  481 LR