YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MHX_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.84
Transmembrane Helix	41	63	0.87
Cytoplasmic	64	93	0.86
Transmembrane Helix	94	116	0.74
Non-Cytoplasmic	117	131	0.76
Transmembrane Helix	132	155	0.75
Cytoplasmic	156	166	0.85
Transmembrane Helix	167	187	0.93
Non-Cytoplasmic	188	194	0.83
Transmembrane Helix	195	216	0.90
Cytoplasmic	217	352	0.94
Transmembrane Helix	353	387	0.73
Non-Cytoplasmic	388	392	0.37
Transmembrane Helix	393	419	0.64
Cytoplasmic	420	434	0.49
Transmembrane Helix	435	456	0.65
Non-Cytoplasmic	457	476	0.59
Transmembrane Helix	477	502	0.84
Cytoplasmic	503	510	0.62
Transmembrane Helix	511	533	0.88
Non-Cytoplasmic	534	539	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASILNQTQE LQESSKVLGH LRCENFFLFP GENTLSDGLR GVLYFLGLAY CFIGLSAITA  60
   61 RFFKSMENVV KHSRKVVTID PITKAEVITY KKVWNFTIAD ISLLAFGTSF PQISLATIDA 120
  121 IRNMGERYAG GLGPGTLVGS AAFDLFPIHA VCVVVPKAGE LKKISDLGVW LVELVWSFWA 180
  181 YIWLYIILEV WSPNVITLVE ALLTVLQYGL LLVHAYAQDK RWPYLSLPMS RGDRPEEWVP 240
  241 EEIDTSKDDN DNDVHDVYSD AAQDAVESGS RNIVDIFSIH SANNDTGITY HTVADTPPDS 300
  301 ATKKGKAKNS TVFDIWKHQF VDAITLETSE SKKVDSIYLR IAKSFWHLLL APWKLLFAFV 360
  361 PPCNIAHGWI AFICSLLFIS GVAFVVTRFT DLISCVTGIN PYVIAFTALA SGTSWPDLVA 420
  421 SKIAAERQLT ADSAIANITC SNSVNIYVGI GVPWLINTVY NYFAYREPLY IENAKGLSFS 480
  481 LLIFFATSVG CIVVLVLRRL IIGAELGGPR LWAWLTSAYF MMLWVVFVVL SSLKVSGVI