YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6648207
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIEFQLRKK GENNLRFELR RRDLSSGSQI CCYTLAQVWR HEFSGTDIIA DLRNWPEIFY  60
   61 VSLVLNLETV VSDLTNHLRL TLFQGTSMFT NFTKLCKGLA LVLVVGHLVV QFIPATVPYL 120
  121 ALIPARTIPF AWNLITSGYF ELSVYGVVFS TVSLLFMGKF LEPVWGSTEF LKFIFVVNFL 180
  181 TYLCVFVTAI ALYYITRLEV YLYMPFAGFH GVLAGLLVGI KQIIPDQEIL LLKIKAKWLP 240
  241 SIMLILSIAS SFFTLDSAAY LPTLIFGTYM GWLYLRYLQR RPETKLRGDP SDDFAFSTFF 300
  301 PELLRPVIDP IALIFHRMLC GRSNATSEDH DYSTSGAPLP GSDSAEASRR RERGARALEE 360
  361 RLGTERLVPA RNKDELQSDG LDNV

Type	Start	End	Confidence
Cytoplasmic	1	97	0.95
Transmembrane Helix	98	122	0.83
Non-Cytoplasmic	123	138	0.85
Transmembrane Helix	139	161	0.85
Cytoplasmic	162	172	0.87
Transmembrane Helix	173	195	0.92
Non-Cytoplasmic	196	201	0.84
Transmembrane Helix	202	224	0.87
Cytoplasmic	225	235	0.87
Transmembrane Helix	236	253	0.93
Non-Cytoplasmic	254	258	0.69
Transmembrane Helix	259	278	0.88
Cytoplasmic	279	384	0.93