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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25403209, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERERSNFFF LFLFCSWVSM AQPTLSLSSD GQALLSLKRP SPSLFSSWDP QDQTPCSWYG  60
   61 ITCSADNRVI SVSIPDTFLN LSSIPDLSSL SSLQFLNLSS TNLSGPIPPS FGKLTHLRLL 120
  121 DLSSNSLSGP IPSELGRLST LQFLILNANK LSGSIPSQIS NLFALQVLCL QDNLLNGSIP 180
  181 SSFGSLVSLQ QFRLGGNTNL GGPIPAQLGF LKNLTTLGFA ASGLSGSIPS TFGNLVNLQT 240
  241 LALYDTEISG TIPPQLGLCS ELRNLYLHMN KLTGSIPKEL GKLQKITSLL LWGNSLSGVI 300
  301 PPEISNCSSL VVFDVSANDL TGDIPGDLGK LVWLEQLQLS DNMFTGQIPW ELSNCSSLIA 360
  361 LQLDKNKLSG SIPSQIGNLK SLQSFFLWEN SISGTIPSSF GNCTDLVALD LSRNKLTGRI 420
  421 PEELFSLKRL SKLLLLGNSL SGGLPKSVAK CQSLVRLRVG ENQLSGQIPK EIGELQNLVF 480
  481 LDLYMNHFSG GLPYEISNIT VLELLDVHNN YITGDIPAQL GNLVNLEQLD LSRNSFTGNI 540
  541 PLSFGNLSYL NKLILNNNLL TGQIPKSIKN LQKLTLLDLS YNSLSGEIPQ ELGQVTSLTI 600
  601 NLDLSYNTFT GNIPETFSDL TQLQSLDLSS NSLHGDIKVL GSLTSLASLN ISCNNFSGPI 660
  661 PSTPFFKTIS TTSYLQNTNL CHSLDGITCS SHTGQNNGVK SPKIVALTAV ILASITIAIL 720
  721 AAWLLILRNN HLYKTSQNSS SSPSTAEDFS YPWTFIPFQK LGITVNNIVT SLTDENVIGK 780
  781 GCSGIVYKAE IPNGDIVAVK KLWKTKDNNE EGESTIDSFA AEIQILGNIR HRNIVKLLGY 840
  841 CSNKSVKLLL YNYFPNGNLQ QLLQGNRNLD WETRYKIAIG AAQGLAYLHH DCVPAILHRD 900
  901 VKCNNILLDS KYEAILADFG LAKLMMNSPN YHNAMSRVAE YGYTMNITEK SDVYSYGVVL 960
  961 LEILSGRSAV EPQIGDGLHI VEWVKKKMGT FEPALSVLDV KLQGLPDQIV QEMLQTLGIA1020
 1021 MFCVNPSPVE RPTMKEVVTL LMEVKCSPEE WGKTSQPLIK PSSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle