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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB13B_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNTERSSNG NIQAETEAKE EKKNIKKESV SLMGLFSAAD KLDYFLMLLG GLGACIHGAT  60
   61 LPLFFVFFGK MLDSLGNLST DPKAISSRVS QNALYLVYLG LVNFVSAWIG VSCWMQTGER 120
  121 QTARLRINYL KSILAKDITF FDTEARDSNL IFHISSDAIL VQDAIGDKTD HVLRYLSQFI 180
  181 AGFVIGFLSV WQLTLLTLGV VPLIAIAGGG YAIVMSTISE KSETAYADAG KVAEEVMSQV 240
  241 RTVYAFVGEE KAVKSYSNSL KKALKLGKRS GLAKGLGVGL TYSLLFCAWA LLLWYASLLV 300
  301 RHGKTNGAKA FTTILNVIFS GFALGQAAPS LSAIAKGRVA AANIFRMIGN NNSESSQRLD 360
  361 EGTTLQNVAG RIEFQKVSFA YPSRPNMVFE NLSFTIRSGK TFAFVGPSGS GKSTIISMVQ 420
  421 RFYEPNSGEI LLDGNDIKSL KLKWFREQLG LVSQEPALFA TTIASNILLG KENANMDQII 480
  481 EAAKAANADS FIKSLPNGYN TQVGEGGTQL SGGQKQRIAI ARAVLRNPKI LLLDEATSAL 540
  541 DAESEKIVQQ ALDNVMEKRT TIVVAHRLST IRNVDKIVVL RDGQVRETGS HSELMLRGGD 600
  601 YATLVNCQET EPQENSRSIM SETCKSQAGS SSSRRVSSSR RTSSFRVDQE KTKNDDSKKD 660
  661 FSSSSMIWEL IKLNSPEWPY ALLGSIGAVL AGAQTPLFSM GIAYVLTAFY SPFPNVIKRD 720
  721 VEKVAIIFAG AGIVTAPIYL LQHYFYTLMG ERLTSRVRLS LFSAILSNEI GWFDLDENNT 780
  781 GSLTSILAAD ATLVRSALAD RLSTIVQNLS LTVTALALAF FYSWRVAAVV TACFPLLIAA 840
  841 SLTEQLFLKG FGGDYTRAYS RATSVAREAI ANIRTVAAYG AEKQISEQFT CELSKPTKNA 900
  901 FVRGHISGFG YGLSQFLAFC SYALGLWYVS VLINHKETNF GDSIKSFMVL IVTAFSVSET 960
  961 LALTPDIVKG TQALGSVFRV LHRETKISPD QPNSRMVSQV KGDIEFRNVS FVYPTRPEID1020
 1021 IFKNLNLRVS AGKSLAVVGP SGSGKSTVIG LIMRFYDPSN GNLCIDGQDI KTLNLRSLRK1080
 1081 KLALVQQEPA LFSTTIYENI KYGNENASEA EIMEAAKAAN AHEFIIKMEE GYKTHAGDKG1140
 1141 VQLSGGQKQR VAIARAVLKD PSVLLLDEAT SALDTSSEKL VQEALDKLMK GRTTVLVAHR1200
 1201 LSTIRKADTV AVLHKGRVVE KGSHRELVSI PNGFYKQLTS LQEVL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle