YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7269214, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFGLSRVS RRLLKSSVSV TPSSSSALLQ SQHKSLSNPV TTHYTNPFTK CYPSWNDNYQ  60
   61 VWSKGRELHQ EKFFGVGWNY RLICGMSSSS SVLEGKPKKD DKEKSDGVVV KEASWIDLYL 120
  121 PEEVRGYAKL ARLDKPIGTW LLAWPCMWSI ALAADPGSLP SFKYMALFGC GALLLRGAGC 180
  181 TINDLLDQDI DTKVDRTKLR PIASGLLTPF QGIGFLGLQL LLGLGILLQL NNYSMYILQP 240
  241 CFRGFIFVTC LFLPTYEEVY ILGNLNLFWL LKPQAFLGLT INWGALLGWT AVKGSIAPSI 300
  301 VLPLYLSGVC WTLVYDTIYA HQDKEDDVKV GVKSTALRFG DNTKLWLTGF GTASIGFLAL 360
  361 SGFSADLGTQ

Type	Start	End	Confidence
Cytoplasmic	1	136	0.75
Transmembrane Helix	137	154	0.73
Non-Cytoplasmic	155	163	0.68
Transmembrane Helix	164	186	0.60
Cytoplasmic	187	205	0.65
Transmembrane Helix	206	228	0.88
Non-Cytoplasmic	229	235	0.61
Transmembrane Helix	236	256	0.78
Cytoplasmic	257	267	0.49
Transmembrane Helix	268	292	0.71
Non-Cytoplasmic	293	294	0.47
Transmembrane Helix	295	315	0.65
Cytoplasmic	316	344	0.74
Transmembrane Helix	345	365	0.91
Non-Cytoplasmic	366	370	0.66