YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15230542, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSFTMIGG EGPNSYRDHS KYQGALVEAA KEKINEAIST KLDIDFTSNL VNIADFGCSS  60
   61 GPNTFTAVQT LIDAVENKYK KESNIEFQVF FNDSSNNDFN TLFKTLPPAR LYFASGVPGS 120
  121 FFGRVLPRNS LHLGVSAYSL HFISKIPKEV KDRDSPVWNK DIHCSGSSKE VAKLYLGQYK 180
  181 IDVGSFLNAR AQELVSGGLL LLLGSCRPNG VQMFETVEGM MIDFIGASLN EIANQGLIDQ 240
  241 QKLDTFKLPI YAPQADELKQ IIEDNGCFTI EVFENIIHAK GEYPLDPEFL TVSFKVTVGG 300
  301 SVASLFGQDG MEKTFELVKE KTQEMLPQIA KAKPGMQYLI VLRRNCFHDL FRSLKRDLNN 360
  361 VIAMMCVCVC MCCIVCYFK

Type	Start	End	Confidence
Non-Cytoplasmic	1	359	0.80
Transmembrane Helix	360	378	0.80
Cytoplasmic	379	379	0.62