YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.84
Transmembrane Helix	13	31	0.95
Non-Cytoplasmic	32	98	0.95
Transmembrane Helix	99	121	0.81
Cytoplasmic	122	133	0.80
Transmembrane Helix	134	154	0.85
Non-Cytoplasmic	155	175	0.80
Transmembrane Helix	176	196	0.95
Cytoplasmic	197	206	0.87
Transmembrane Helix	207	227	0.93
Non-Cytoplasmic	228	233	0.68
Transmembrane Helix	234	255	0.90
Cytoplasmic	256	311	0.96
Transmembrane Helix	312	327	0.50
Non-Cytoplasmic	328	370	0.54
Transmembrane Helix	371	391	0.96
Cytoplasmic	392	400	0.84
Transmembrane Helix	401	420	0.95
Non-Cytoplasmic	421	428	0.70
Transmembrane Helix	429	453	0.75
Cytoplasmic	454	474	0.68
Transmembrane Helix	475	496	0.81
Non-Cytoplasmic	497	512	0.76
Transmembrane Helix	513	531	0.95
Cytoplasmic	532	541	0.82
Transmembrane Helix	542	562	0.88
Non-Cytoplasmic	563	570	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLFSSRLG SQSLSLLINI FFIFLIFLHF ASQTPPPSGS IQTLNSFAGG DSDSCSGGLA  60
   61 SLDDHRSKCS YIRSQSKCGP QGYIDYLKIF FCIFGQSPVL GHLVLSAWLF VLFYLLGDTA 120
  121 ASYFCPSLDS LSKVLKLSPT MAGVTLLSLG NGAPDLFSSV VSFTRSNNGD FGLNSILGGA 180
  181 FFVSSFVVGT ICVLIGSRDV AIDRNSFIRD VVFLLVALCC LGLIIFIGKV TIWVALCYLS 240
  241 IYLLYVGFLS VSHFFDRKKR MSDQILRSRE DLAEMGVSLL GYIAEEKLAL PEKTTQEFKI 300
  301 VFEDSPKRHR SCFSVLVSII GLPLYLPRRL TIPVVCEEKW SKPCAVVSTA IAPVLLTELY 360
  361 CSHYSGSQRN LILYIISGSI GLIVGILAYL TTEKSHPPKK FSLVWLLGGF TMSVTWTYMI 420
  421 AQELVSLLIS LGNIFGISPS VLGLTVLAWG NSLGDLIANV TVAFHGGNDG AQIALSGCYA 480
  481 GPLFNTVIGL GVPLVISSLA EYPGVYIIPS DNSLLETLGF LMVGLLWALV IMPKKKMRLD 540
  541 KLVGGGLLAI YLCFLSLRLA RVFGVLDTDR