YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.64
Transmembrane Helix	44	66	0.85
Cytoplasmic	67	74	0.69
Transmembrane Helix	75	93	0.86
Non-Cytoplasmic	94	110	0.79
Transmembrane Helix	111	130	0.88
Cytoplasmic	131	143	0.83
Transmembrane Helix	144	165	0.90
Non-Cytoplasmic	166	184	0.91
Transmembrane Helix	185	204	0.93
Cytoplasmic	205	215	0.89
Transmembrane Helix	216	240	0.86
Non-Cytoplasmic	241	247	0.85
Transmembrane Helix	248	267	0.91
Cytoplasmic	268	286	0.86
Transmembrane Helix	287	306	0.92
Non-Cytoplasmic	307	309	0.63
Transmembrane Helix	310	331	0.50
Cytoplasmic	332	336	0.44
Transmembrane Helix	337	358	0.74
Non-Cytoplasmic	359	368	0.47
Transmembrane Helix	369	393	0.74
Cytoplasmic	394	429	0.62
Transmembrane Helix	430	450	0.80
Non-Cytoplasmic	451	800	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSQALVPG PSPPHSKAEI CYGATFFNIS SYGIMEKYET PTVIFGYALP LLELQIILIF  60
   61 VCIVLSHMFL RRIGIPRFVS NILAGLILGP QLLDLLEYSS DRLSLDIPGN VALEGVARLG 120
  121 LVMFTFLMGV KTNKRAVYQI GKRPIVIAVS SFFVTMISGL AFRNFRLDKV DPLYMPLRLA 180
  181 PTERSVIVSI QAVTLLPVIT HLVYELKMSN SELGRIAIST AAVSDFLGFL TLVCISYVGT 240
  241 YRYVSPGIAN RDIVALIILV LVILFIFKPM AQRIVDMTPE GKPVPKVYLY VTILTAIAAS 300
  301 IYLSVFNQMY ILGALLVGLA IPDGPPLGSA LEARFESLVT NIFFPISIAV MAMKADVVRA 360
  361 LYSFDDISFN ILLLGLTVVV KWTASFVPCL IFCELPTRES VIIATIMNYK GFVDLCFFDV 420
  421 ALRRRNLSRA TYTVMIIYVL LNAGILPTII KALYDPKRKY IGYVKRDIMH LKTNSDLKIL 480
  481 TCLHKPDNIS GAISLLELLS SPLNNDNKDR GVIAVTALHL VKLAGRTFPI LIPHDKRSKA 540
  541 RLLQNSYIQT MMLAFTEFQQ ENWESTTVSS FTAYSHENLM DQDICNLALD HLTSMIIVPS 600
  601 GRKWSPDGEY ESDDIMIRRV NESLLDLAPC SVGILNYRGY NKGKKKTNSI INVGVIFIGG 660
  661 KDDREALSLA KWMGQNSRVC LTVIRFLSGQ ELDKSKNWDY LVDDEVLNDL KATYSLANNF 720
  721 NYMEKVVNGG PAVATTVRLV AEDHDLMIVG RDHEDYSLDL TGLAQWMELP ELGVIGDLLA 780
  781 SKDLRARVSV LVVQQQQQHG