YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2191178, gi|7...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.32
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENCNSRHF SWLMKSCLPN PSDAKSLVQI HQPSSTAANS SATIASLPDD LLLECISRVP  60
   61 SSSIPSLAVV CRRWSRLLHS PYFLHLRRRL GLLRHSLFAI STVDSGLFAA DLQFQSEIAS 120
  121 WKVSLAVSSR SVGVDGSYGS LSHARAAAIG PRVYVVSRNA VLRYDSWMGT LNLRSPMIFP 180
  181 RKKFAIAVVS GKIYVAGGGG GSEVAAAVEE YDPELNRWEV VTQSARKRYG CIGAAVDGVF 240
  241 YVIGGLKIGN ETSRAVAARA YASSMDLFDV ESRQWLRSRS VPGGGCVVAA CAAVGYVYVL 300
  301 TSHAVELSFW RFDARRRGGN SGFGEWQRLK SPPLPAQVRL DGTVRFSCVG VEDKVAVVQV 360
  361 VGCIDDLLRR SGRGSNLYFS ILINYKQLFI KNIKSISNII WKYYNFTILY NPEPCVSYTI 420
  421 ILRKKTKLSV RNQTCFKKSS LSSSSTAKKT TNLSMREQTM FKKALELSTL CNIDVCVIYY 480
  481 GRDGKLIKTW PDDQSKVRDM AERFSRLHER ERCKKRTNLS LFLRKKILDD TKLSEKVLEM 540
  541 EDSLESGLRV LQDKLLLLQP EKNQTEFGQT RAVSSTTNPL SPPPSLIEDH RHQQRTEPLM 600
  601 SGVSNTEQDL STSSLSQNQS KFSVFLYNHD NCSFYQVPDS VSSFDSLTST GLLGEQGSGL 660
  661 GSSFDLPMVF PPQMQTQTPL VPFDQFAPWN QAPSFADPMM FPYN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle