YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GRP17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEELSQKPS SAQSLSLREG RNRFPFLSLS QREGRFFPSL SLSERDGRKF SFLSMFSFLM  60
   61 PLLEVIKIII ASVASVIFVG FACVTLAGSA AALVVSTPVF IIFSPVLVPA TIATVVLATG 120
  121 FTAGGSFGAT ALGLIMWLVK RRMGVKPKDN PPPAGLPPNS GAGAGGAQSL IKKSKAKSKG 180
  181 GLKAWCKKML KSKFGGKKGK SGGGKSKFGG KGGKSEGEEG MSSGDEGMSG SEGGMSGGEG 240
  241 GKSKSGKGKL KAKLEKKKGM SGGSESEEGM SGSEGGMSGG GGSKSKSKKS KLKAKLGKKK 300
  301 GMSGGMSGSE EGMSGSEGGM SSGGGSKSKS KKSKLKAKLG KKKSMSGGMS GSEEGMSGSE 360
  361 GGMSGGGGGK SKSRKSKLKA NLGKKKCMSG GMSGSEGGMS RSEGGISGGG MSGGSGSKHK 420
  421 IGGGKHGGLG GKFGKKRGMS GSGGGMSGSE GGVSGSEGSM SGGGMSGGSG SKHKIGGGKH 480
  481 GGLRGKFGKK RGMSGSEGGM SGSEGGMSES GMSGSGGGKH KIGGGKHKFG GGKHGGGGGH 540
  541 MAE

Type	Start	End	Confidence
Cytoplasmic	1	67	0.73
Transmembrane Helix	68	102	0.75
Non-Cytoplasmic	103	111	0.44
Transmembrane Helix	112	138	0.86
Cytoplasmic	139	543	0.65