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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y1680_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSSFFNKH LLLSLLILLQ SCLLSSSSST DSETLLNFKL TADSTGKLNS WNTTTNPCQW  60
   61 TGVSCNRNRV TRLVLEDINL TGSISSLTSL TSLRVLSLKH NNLSGPIPNL SNLTALKLLF 120
  121 LSNNQFSGNF PTSITSLTRL YRLDLSFNNF SGQIPPDLTD LTHLLTLRLE SNRFSGQIPN 180
  181 INLSDLQDFN VSGNNFNGQI PNSLSQFPES VFTQNPSLCG APLLKCTKLS SDPTKPGRPD 240
  241 EAKASPLNKP ETVPSSPTSI HGGDKSNNTS RISTISLIAI ILGDFIILSF VSLLLYYCFW 300
  301 RQYAVNKKKH SKILEGEKIV YSSNPYPTST QNNNNQNQQV GDKGKMVFFE GTRRFELEDL 360
  361 LRASAEMLGK GGFGTAYKAV LEDGNEVAVK RLKDAVTVAG KKEFEQQMEV LGRLRHTNLV 420
  421 SLKAYYFARE EKLLVYDYMP NGSLFWLLHG NRGPGRTPLD WTTRLKIAAG AARGLAFIHG 480
  481 SCKTLKLTHG DIKSTNVLLD RSGNARVSDF GLSIFAPSQT VAKSNGYRAP ELIDGRKHTQ 540
  541 KSDVYSFGVL LLEILTGKCP NMVETGHSGG AVDLPRWVQS VVREEWTAEV FDLELMRYKD 600
  601 IEEEMVGLLQ IAMACTAVAA DHRPKMGHVV KLIEDIRGGG SEASPCNDGI NSAVDSPCLS 660
  661 EDTCGGTTSQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle