YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST3B_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKSKLVSL LFLIATLSST FAASFSDSDS DSDLLNELVS LRSTSESGVI HLDDHGISKF  60
   61 LTSASTPRPY SLLVFFDATQ LHSKNELRLQ ELRREFGIVS ASFLANNNGS EGTKLFFCEI 120
  121 EFSKSQSSFQ LFGVNALPHI RLVSPSISNL RDESGQMDQS DYSRLAESMA EFVEQRTKLK 180
  181 VGPIQRPPLL SKPQIGIIVA LIVIATPFII KRVLKGETIL HDTRLWLSGA IFIYFFSVAG 240
  241 TMHNIIRKMP MFLQDRNDPN KLVFFYQGSG MQLGAEGFAV GFLYTVVGLL LAFVTNVLVR 300
  301 VKNITAQRLI MLLALFISFW AVKKVVYLDN WKTGYGIHPY WPSSWR

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	194	0.99
Transmembrane Helix	195	214	0.93
Cytoplasmic	215	224	0.89
Transmembrane Helix	225	246	0.92
Non-Cytoplasmic	247	276	0.94
Transmembrane Helix	277	299	0.89
Cytoplasmic	300	308	0.78
Transmembrane Helix	309	327	0.89
Non-Cytoplasmic	328	346	0.92