YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR31_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.81
Transmembrane Helix	53	72	0.78
Non-Cytoplasmic	73	78	0.61
Transmembrane Helix	79	102	0.89
Cytoplasmic	103	168	0.80
Transmembrane Helix	169	190	0.87
Non-Cytoplasmic	191	199	0.81
Transmembrane Helix	200	223	0.93
Cytoplasmic	224	315	0.97
Transmembrane Helix	316	335	0.92
Non-Cytoplasmic	336	356	0.87
Transmembrane Helix	357	378	0.87
Cytoplasmic	379	393	0.93
Transmembrane Helix	394	415	0.89
Non-Cytoplasmic	416	443	0.89
Transmembrane Helix	444	467	0.81
Cytoplasmic	468	478	0.89
Transmembrane Helix	479	500	0.93
Non-Cytoplasmic	501	525	0.91
Transmembrane Helix	526	545	0.94
Cytoplasmic	546	563	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQKTRGL SKSCALLIVI AGMERYAFKG VASNLVTYLT DVVKMSNSRA AKTVNTWAGF  60
   61 TSMLPLFSAP LADTYWDRFF TILASSSVYF VGLVGLTWTA FAGSRSATKT ISSYFLYSSL 120
  121 CLVSIGLGVL NPSLQAFGAD QLDHDLDKNF DLSSGDQKDA KATRKTQFFQ LWYFGVCTGS 180
  181 LMGVTVMAYI QDTFGWVLGF AIPGIVIFLS ILVFMSGCGI YVYAPGARLK KKTTTTPFEK 240
  241 ILKFIKGRVV KQRSIYTLAD EKDLDAMELE LEERPLCKCE TEDIETPSTT SKGLEDDESS 300
  301 KTVFSGIDNV KLVIRLFPIW MMLLMFAVIF QLPATFFTKQ GVTMKRNIGS NFKIPPATLQ 360
  361 STITLSIILL MPLYDKILIP ITKRIKKNGT GISVMERMGV GMFLSIIAIV IAAIVERKRL 420
  421 AISQKMKTLP DYDPETVPLS IFWLLPQYIL LGISDIFTVV GMQEFFYSEV PVRMRTMGFA 480
  481 LYTSVFGVGS FVSAALISIV EAYSSSTGDR QNWFADDMSE ARLDKYYWLL ALTSTISFVV 540
  541 YIFLCKFFKS SSDQGDEKEE APK