YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PECT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWEKEKIVG SCIVGGAAFA VGASFLHLFL KGELPLGLGL GLSCPWRILR KRKPVRVYMD  60
   61 GCFDMMHYGH CNALRQARAL GDQLVVGVVS DEEIIANKGP PVTPLHERMT MVKAVKWVDE 120
  121 VISDAPYAIT EDFMKKLFDE YQIDYIIHGD DPCVLPDGTD AYALAKKAGR YKQIKRTEGV 180
  181 SSTDIVGRML LCVRERSISD THSRSSLQRQ FSHGHSSPKF EDGASSAGTR VSHFLPTSRR 240
  241 IVQFSNGKGP GPDARIIYID GAFDLFHAGH VEILRRAREL GDFLLVGIHN DQTVSAKRGA 300
  301 HRPIMNLHER SLSVLACRYV DEVIIGAPWE VSRDTITTFD ISLVVHGTVA ESDDFRKEED 360
  361 NPYSVPISMG IFQVLDSPLD ITTSTIIRRI VANHEAYQKR NAKKEASEKK YYEQKSFVSG 420
  421 D

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	30	0.83
Non-Cytoplasmic	31	421	0.81