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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PP249_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLGNVLHL SPMVLATTTT TKPSLLNQSK CTKATPSSLK NCKTIDELKM FHRSLTKQGL  60
   61 DNDVSTITKL VARSCELGTR ESLSFAKEVF ENSESYGTCF MYNSLIRGYA SSGLCNEAIL 120
  121 LFLRMMNSGI SPDKYTFPFG LSACAKSRAK GNGIQIHGLI VKMGYAKDLF VQNSLVHFYA 180
  181 ECGELDSARK VFDEMSERNV VSWTSMICGY ARRDFAKDAV DLFFRMVRDE EVTPNSVTMV 240
  241 CVISACAKLE DLETGEKVYA FIRNSGIEVN DLMVSALVDM YMKCNAIDVA KRLFDEYGAS 300
  301 NLDLCNAMAS NYVRQGLTRE ALGVFNLMMD SGVRPDRISM LSAISSCSQL RNILWGKSCH 360
  361 GYVLRNGFES WDNICNALID MYMKCHRQDT AFRIFDRMSN KTVVTWNSIV AGYVENGEVD 420
  421 AAWETFETMP EKNIVSWNTI ISGLVQGSLF EEAIEVFCSM QSQEGVNADG VTMMSIASAC 480
  481 GHLGALDLAK WIYYYIEKNG IQLDVRLGTT LVDMFSRCGD PESAMSIFNS LTNRDVSAWT 540
  541 AAIGAMAMAG NAERAIELFD DMIEQGLKPD GVAFVGALTA CSHGGLVQQG KEIFYSMLKL 600
  601 HGVSPEDVHY GCMVDLLGRA GLLEEAVQLI EDMPMEPNDV IWNSLLAACR VQGNVEMAAY 660
  661 AAEKIQVLAP ERTGSYVLLS NVYASAGRWN DMAKVRLSMK EKGLRKPPGT SSIQIRGKTH 720
  721 EFTSGDESHP EMPNIEAMLD EVSQRASHLG HVPDLSNVLM DVDEKEKIFM LSRHSEKLAM 780
  781 AYGLISSNKG TTIRIVKNLR VCSDCHSFAK FASKVYNREI ILRDNNRFHY IRQGKCSCGD 840
  841 FW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle