YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUMP1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAGKSDLS LPKTFACSAF AACVGEVCTI PLDTAKVRLQ LQKSALAGDV TLPKYRGLLG  60
   61 TVGTIAREEG LRSLWKGVVP GLHRQCLFGG LRIGMYEPVK NLYVGKDFVG DVPLSKKILA 120
  121 GLTTGALGIM VANPTDLVKV RLQAEGKLAA GAPRRYSGAL NAYSTIVRQE GVRALWTGLG 180
  181 PNVARNAIIN AAELASYDQV KETILKIPGF TDNVVTHILS GLGAGFFAVC IGSPVDVVKS 240
  241 RMMGDSGAYK GTIDCFVKTL KSDGPMAFYK GFIPNFGRLG SWNVIMFLTL EQAKKYVREL 300
  301 DASKRN

Type	Start	End	Confidence
Signal Peptide	1	25	0.57
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	306	0.82