YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT25_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.73
Transmembrane Helix	47	68	0.87
Non-Cytoplasmic	69	92	0.51
Transmembrane Helix	93	127	0.56
Cytoplasmic	128	135	0.75
Transmembrane Helix	136	157	0.88
Non-Cytoplasmic	158	171	0.84
Transmembrane Helix	172	195	0.86
Cytoplasmic	196	205	0.81
Transmembrane Helix	206	227	0.93
Non-Cytoplasmic	228	293	0.91
Transmembrane Helix	294	313	0.88
Cytoplasmic	314	333	0.80
Transmembrane Helix	334	355	0.94
Non-Cytoplasmic	356	360	0.74
Transmembrane Helix	361	382	0.93
Cytoplasmic	383	389	0.73
Transmembrane Helix	390	413	0.88
Non-Cytoplasmic	414	422	0.80
Transmembrane Helix	423	444	0.92
Cytoplasmic	445	502	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS  60
   61 TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM GTACDLFGPR LASAALTLST 120
  121 APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG 180
  181 GGATQLIMPI VFSLIRNMGA TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH 240
  241 KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG 300
  301 IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS 360
  361 IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG GNVGAVLTQL IFFKGSTYTR 420
  421 ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG 480
  481 SQKFAETSIS ERGRATTTHP QT