YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8671769, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVIDSHYL AITAIVTVSL SFLVGYQFIF FVITALFKFD QVTDFAGSTN FVILAVLTLL  60
   61 LKGTWHYRQI VLTVLVVVWG LRLGLFLLMR ILQWGEDRRF DDMRENIGKL VVFWIFQAVW 120
  121 VWTVSLPVTF VNASNGGRLF QPADVIGWTM WVAGFLIEAT ADQQKLSFKK CPENKGKWCD 180
  181 VGVWKYSRHP NYFGEMLLWW GLYVASLPVL KGLEYLVIIG PVFLTLLLLF VSGIPLLEES 240
  241 ADKKYGNLGA YRHYKKTTRY DTKLFEHRYW PSRCVIRAKC FPLVNWILVY SPLILLPRGV 300
  301 YGYLPIWCKS VFLFEFPLYS RNLPQETTAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.54
Transmembrane Helix	9	33	0.87
Cytoplasmic	34	41	0.47
Transmembrane Helix	42	61	0.66
Non-Cytoplasmic	62	69	0.60
Transmembrane Helix	70	92	0.88
Cytoplasmic	93	109	0.78
Transmembrane Helix	110	131	0.90
Non-Cytoplasmic	132	139	0.74
Transmembrane Helix	140	160	0.63
Cytoplasmic	161	191	0.72
Transmembrane Helix	192	210	0.68
Non-Cytoplasmic	211	214	0.66
Transmembrane Helix	215	237	0.86
Cytoplasmic	238	282	0.83
Transmembrane Helix	283	302	0.55
Non-Cytoplasmic	303	330	0.56