YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15222875, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPLPLIFL IFSHLFVSGV RSTSFIMVNK CEYTVWPGLL SNAGVPPLPT TGFVLQKGEE  60
   61 RTISAPTSWG GRFWGRTQCS TDTDGKFTCL TGDCGSGTLE CSGSGATPPA TLAEFTLDGS 120
  121 NGLDFYDVSL VDGYNVPMLV APQGGSGLNC SSTGCVVDLN GSCPSELKVT SLDGRGKQSM 180
  181 GCKSACEAFR TPEYCCSGAH GTPDTCKPSS YSLMFKTACP RAYSYAYDDQ SSTFTCAESP 240
  241 NYVITFCPTP NTSQKSSQDQ SPDPKPTTPT GTSSTTPAGD SSTTWSPVDT SMIYEGALDQ 300
  301 NKGSPSTCHL SLCGITVTLA LAFCRMWRLF

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	307	0.99
Transmembrane Helix	308	327	0.69
Cytoplasmic	328	330	0.54