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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PDAT1_ARATH
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIHRKKPT EKPSTPPSEE VVHDEDSQKK PHESSKSHHK KSNGGGKWSC IDSCCWFIGC  60
   61 VCVTWWFLLF LYNAMPASFP QYVTERITGP LPDPPGVKLK KEGLKAKHPV VFIPGIVTGG 120
  121 LELWEGKQCA DGLFRKRLWG GTFGEVYKRP LCWVEHMSLD NETGLDPAGI RVRAVSGLVA 180
  181 ADYFAPGYFV WAVLIANLAH IGYEEKNMYM AAYDWRLSFQ NTEVRDQTLS RMKSNIELMV 240
  241 STNGGKKAVI VPHSMGVLYF LHFMKWVEAP APLGGGGGPD WCAKYIKAVM NIGGPFLGVP 300
  301 KAVAGLFSAE AKDVAVARAI APGFLDTDIF RLQTLQHVMR MTRTWDSTMS MLPKGGDTIW 360
  361 GGLDWSPEKG HTCCGKKQKN NETCGEAGEN GVSKKSPVNY GRMISFGKEV AEAAPSEINN 420
  421 IDFRGAVKGQ SIPNHTCRDV WTEYHDMGIA GIKAIAEYKV YTAGEAIDLL HYVAPKMMAR 480
  481 GAAHFSYGIA DDLDDTKYQD PKYWSNPLET KLPNAPEMEI YSLYGVGIPT ERAYVYKLNQ 540
  541 SPDSCIPFQI FTSAHEEDED SCLKAGVYNV DGDETVPVLS AGYMCAKAWR GKTRFNPSGI 600
  601 KTYIREYNHS PPANLLEGRG TQSGAHVDIM GNFALIEDIM RVAAGGNGSD IGHDQVHSGI 660
  661 FEWSERIDLK L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle