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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RBOHC_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVSFEVSG GYHSDAEAGN SGPMSGGQLP PIYKKPGNSR FTAENSQRTR TAPYVDLTVD  60
   61 VQDDTVSVHS LKMEGGSSVE ESPELTLLKR NRLEKKTTVV KRLASVSHEL KRLTSVSGGI 120
  121 GGRKPPRPAK LDRTKSAASQ ALKGLKFISK TDGGAGWSAV EKRFNQITAT TGGLLLRTKF 180
  181 GECIGMTSKD FALELFDALA RRRNITGEVI DGDQLKEFWE QINDQSFDSR LKTFFDMVDK 240
  241 DADGRLTEDE VREIISLSAS ANNLSTIQKR ADEYAALIME ELDPDNIGYI MLESLETLLL 300
  301 QAATQSVITS TGERKNLSHM MSQRLKPTFN RNPLKRWYRG LRFFLLDNWQ RCWVIVLWFI 360
  361 VMAILFTYKY IQYRRSPVYP VMGDCVCMAK GAAETVKLNM ALILLPVCRN TITWLRNKTR 420
  421 LGRVVPFDDN LNFHKVIAVG IIVGVTMHAG AHLACDFPRL LHATPEAYRP LRQFFGDEQP 480
  481 KSYWHFVNSV EGITGLVMVL LMAIAFTLAT PWFRRGKLNY LPGPLKKLAS FNAFWYTHHL 540
  541 FVIVYILLVA HGYYLYLTRD WHNKTTWMYL VVPVVLYACE RLIRAFRSSI KAVTIRKVAV 600
  601 YPGNVLAIHL SRPQNFKYKS GQYMFVNCAA VSPFEWHPFS ITSAPQDDYL SVHIRVLGDW 660
  661 TRALKGVFSE VCKPPPAGVS GLLRADMLHG ANNPDFPKVL IDGPYGAPAQ DYKKYEVVLL 720
  721 VGLGIGATPM ISIVKDIVNN IKAKEQAQLN RMENGTSEPQ RSKKESFRTR RAYFYWVTRE 780
  781 QGSFDWFKNI MNEVAERDAN RVIEMHNYCT SVYEEGDARS ALIHMLQSLN HAKNGVDIVS 840
  841 GTRVMSHFAK PNWRNVYKRI AMDHPNTKVG VFYCGAPALT KELRHLALDF THKTSTRFSF 900
  901 HKENF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle