YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60547729, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLLHRTIL LTSPSHSLIR RTSLSAMATT ASSSLLLPSI SLNNLSSSKN ASFGFAAKNL  60
   61 SRSRISMSVS AGSQSTTVHD SLFADYKPTS AFLFPGQGAQ AVGMGKESQS VGAAGELYKK 120
  121 ANDILGYDLL DICVNGPKEK LDSTVISQPA IYVTSLAAVE LLRVREGGEQ IINSVDVTCG 180
  181 LSLGEYTALA FAGAFSFEDG LKLVKLRGEA MQAAADAAKS AMVSIIGLDS EKVQQLCDAA 240
  241 NQEVDEADKV QIANYLCPGN YAVSGGLKGI EVVEAKAKSF KARMTVRLAV AGAFHTSFME 300
  301 PAVSRLEAAL AATEIRSPRI PVISNVDAQP HADPDTIKKI LARQVTSPVQ WETTVKTLLS 360
  361 KGLKSSYELG PGKVIAGIFK RVDKSASFEN ISA

Type	Start	End	Confidence
Signal Peptide	1	41	0.91
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	393	0.99