YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RGXT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKQHILKQ STFSSSPSSY SSISDRPISL LSRNGLLLLL LALVLLLGVL LPWPGSPLFL  60
   61 FPNRLSSSLS PSPQSKWRDY TLAQAARFVA KNGTVIVCAV SSPFLPFLNN WLISVSRQKH 120
  121 QDKVLVIAED YITLYKVNEK WPGHAVLIPP ALDSKTAFSF GSQGFFNFTA RRPQHLLQIL 180
  181 ELGYNVMYND VDMVWLQDPF LYLEGSHDAY FTDDMPQIKP LNHSHDLPHP DRNGETYICS 240
  241 CMIYLRPTNG AKLLMKKWSE ELQSQAWSES IRFKANDQPA FNLALNKTAH QVDLYLLSQV 300
  301 AFPTGGLYFK NEAWVQETKG KHVIVHNNYI IGYDRKMKRF QDYGLWLVDD HALESPLGKL 360
  361 E

Type	Start	End	Confidence
Cytoplasmic	1	35	0.82
Transmembrane Helix	36	55	0.83
Non-Cytoplasmic	56	361	0.78