YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANSHPPNS KNVLCNAAAG AAAGVVAATF VCPLDVIKTR FQVHGLPKLG DANIKGSLIV  60
   61 GSLEQIFKRE GMRGLYRGLS PTVMALLSNW AIYFTMYDQL KSFLCSNDHK LSVGANVLAA 120
  121 SGAGAATTIA TNPLWVVKTR LQTQGMRVGI VPYKSTFSAL RRIAYEEGIR GLYSGLVPAL 180
  181 AGISHVAIQF PTYEMIKVYL AKKGDKSVDN LNARDVAVAS SIAKIFASTL TYPHEVVRAR 240
  241 LQEQGHHSEK RYSGVRDCIK KVFEKDGFPG FYRGCATNLL RTTPAAVITF TSFEMVHRFL 300
  301 VTHIPSEQSS IL

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.54
Transmembrane Helix	14	34	0.56
Cytoplasmic	35	74	0.75
Transmembrane Helix	75	94	0.79
Non-Cytoplasmic	95	116	0.84
Transmembrane Helix	117	137	0.74
Cytoplasmic	138	170	0.74
Transmembrane Helix	171	188	0.45
Non-Cytoplasmic	189	312	0.61