YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL38_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQPGTEIKA SDLTLLVITI ILFAIFIVGL ASVCFRWTSR QFYSQESINP FTDSDVESRT  60
   61 SITAVRGLDE AIINSFPTFL YSEVKERRIG IGGVECAVCI CEFEDHETLR LMPECCHVFH 120
  121 ADCVSVWLSD HSTCPLCRVD LCLQPGERSY LNPEPDLVES TNSHLFDGVT WTNRNRPSRS 180
  181 WSTRLSQCRV SQILISRSHS TGHSVVQPLD NLDRFTLRLP EEVRRQLTKK TVDNVAFSQA 240
  241 RSSRRGYRSR SAGSERSVFS YQRRMHSFSD CAWSTSCGGE AVAPSKDSRR ISVEQSQLDD 300
  301 RV

Type	Start	End	Confidence
Cytoplasmic	1	12	0.86
Transmembrane Helix	13	35	0.91
Non-Cytoplasmic	36	302	0.89