YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALMTE_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRVHERSM GMEEEGSTKN MKTKVLELPT KIKKILKNIW KVGKDDPRRV KHALKVGVSL  60
   61 TLVSLLYLME PLFKGIGNSA IWAVMTVVVV LEFSAGATLC KGLNRGLGTL IAGSLAFFIE 120
  121 FVANDSGKIF RAIFIGAAVF IIGALITYLR FIPYIKKNYD YGMLIFLLTF NLITVSSYRV 180
  181 DTVIKIAHER FYTIAMGVGI CLLMSLLVFP IWSGEDLHKS TVAKLQGLSY SIEACVNEYF 240
  241 EEEEKDEETS DLSEDTIYNG YKTVLDSKSA DEALAMYASW EPRHTRHCHR FPWKHYVKVG 300
  301 SVLRQFGYTV VALHGCLKTE IQTPRPLRGL FKDPCVRLAG EICKVLSELA ASIRNRRHCS 360
  361 PEILSDSLQV ALQDLNTAIK SQPKLFLGSS QNGNVSQGNS GRHNPNVAVS QHINKDTNEA 420
  421 ASYQNTGTPR GERMSRFGPN VSFSRLRADT LERRSAAATN ERKILRQQLS RIVVLTSLEF 480
  481 SEALPFAAFA SLLVEMVARL DNVIEEVEEL GTIACFKDYD NNVDQKDVEV RVEKPADLVV 540
  541 GVE

Type	Start	End	Confidence
Cytoplasmic	1	52	0.95
Transmembrane Helix	53	87	0.66
Non-Cytoplasmic	88	88	0.06
Transmembrane Helix	89	123	0.72
Cytoplasmic	124	128	0.41
Transmembrane Helix	129	152	0.88
Non-Cytoplasmic	153	158	0.41
Transmembrane Helix	159	180	0.82
Cytoplasmic	181	190	0.46
Transmembrane Helix	191	212	0.94
Non-Cytoplasmic	213	543	0.55