YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10177241
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDIKKPNI TKTKKKKTGF VVKMQLNNNR GGNKRNIFIF FFFRNYYTWI LWFCLSLYFF  60
   61 TSYFSVEDQS SPSSIRLLSN HKTSSSLPSR ALIESSAIKT TSIGKKASIF ISSLFQIFHF 120
  121 SSKIDFLGSL IKGLFTGMKI YVYDLPASYN DDWVTASDRC ASHLFAAEVA IHRALLSSDV 180
  181 RTLDPDEADY FFVPVYVSCN FSTSNGFPSL SHARSLLSSA VDFLSDHYPF WNRSQGSDHV 240
  241 FVASHDFGAC FHAMEDMAIE EGIPKFMKRS IILQTFGVKY KHPCQEVEHV VIPPYIPPES 300
  301 VQKAIEKAPV NGRRDIWAFF RGKMEVNPKN ISGRFYSKGV RTAILKKFGG RRRFYLNRHR 360
  361 FAGYRSEIVR SVFCLCPLGW APWSPRLVES AVLGCVPVVI ADGIQLPFSE TVQWPEISLT 420
  421 VAEKDVRNLR KVLEHVAATN LSAIQRNLHE PVFKRALLYN VPMKEGDATW HILESLWRKL 480
  481 DDRSYRRSRV LSQREVDM

Type	Start	End	Confidence
Cytoplasmic	1	44	0.93
Transmembrane Helix	45	64	0.91
Non-Cytoplasmic	65	498	0.98