YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7576190, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFLIFLLE AFQVVIATVV SIVFLVFAGL TLVGSATALT ITTPLFIIFS PILVPATIAT  60
   61 AVITTGFTTG GALGAMAVAL IRRRMGAKPT AEGTSSAQPL LKLPVYGGYG GFWGGKKFSG 120
  121 TFGNKPGGGN PFGDISKWLG PGAAGGGAPG GLGGGGNPFG NISKWFGPGA AGGDASAAGG 180
  181 APAAEAAPAA GAAPAAGAAP AAGAAPAAGA APAAGAAPAA GGSTPPTW

Type	Start	End	Confidence
Cytoplasmic	1	11	0.75
Transmembrane Helix	12	39	0.81
Non-Cytoplasmic	40	55	0.60
Transmembrane Helix	56	80	0.88
Cytoplasmic	81	195	0.69
Transmembrane Helix	196	220	0.63
Non-Cytoplasmic	221	228	0.46