YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15220009, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEIITVRKV FLIGFLILIL NWVWRAVNWV WLRPKRLEKY LKKQGFSGNS YRILMGDMRE  60
   61 SNQMDQVAHS LPLPLDADFL PRMMPFLHHT VLKHGKKCFT WYGPYPNVIV MDPETLREIM 120
  121 SKHELFPKPK IGSHNHVFLS GLLNHEGPKW SKHRSILNPA FRIDNLKSIL PAFNSSCKEM 180
  181 LEEWERLASA KGTMELDSWT HCHDLTRNML ARASFGDSYK DGIKIFEIQQ EQIDLGLLAI 240
  241 RAVYIPGSKF LPTKFNRRLR ETERDMRAMF KAMIETKEEE IKRGRAGQNV TSSLFVWTLV 300
  301 ALSQHQDWQN KARDEISQAF GNNEPDFEGL SHLKVVTMIL HEVLRLYSPA YFTCRITKQE 360
  361 VKLERFSLPE GVVVTIPMLL VHHDSDLWGD DVKEFKPERF ANGVAGATKG RLSFLPFSSG 420
  421 PRTCIGQNFS MLQAKLFLAM VLQRFSVELS PSYTHAPFPA ATTFPQHGAH LIIRKL

Type	Start	End	Confidence
Signal Peptide	1	25	0.50
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	476	0.95