YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS18_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVNVKLLY RYVLTNFFNL CLFPLTAFLA GKASRLTIND LHNFLSYLQH NLITVTLLFA  60
   61 FTVFGLVLYI VTRPNPVYLV DYSCYLPPPH LKVSVSKVMD IFYQIRKADT SSRNVACDDP 120
  121 SSLDFLRKIQ ERSGLGDETY SPEGLIHVPP RKTFAASREE TEKVIIGALE NLFENTKVNP 180
  181 REIGILVVNS SMFNPTPSLS AMVVNTFKLR SNIKSFNLGG MGCSAGVIAI DLAKDLLHVH 240
  241 KNTYALVVST ENITQGIYAG ENRSMMVSNC LFRVGGAAIL LSNKSGDRRR SKYKLVHTVR 300
  301 THTGADDKSF RCVQQEDDES GKIGVCLSKD ITNVAGTTLT KNIATLGPLI LPLSEKFLFF 360
  361 ATFVAKKLLK DKIKHYYVPD FKLAVDHFCI HAGGRAVIDE LEKNLGLSPI DVEASRSTLH 420
  421 RFGNTSSSSI WYELAYIEAK GRMKKGNKAW QIALGSGFKC NSAVWVALRN VKASANSPWQ 480
  481 HCIDRYPVKI DSDLSKSKTH VQNGRS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.73
Transmembrane Helix	8	31	0.83
Non-Cytoplasmic	32	49	0.65
Transmembrane Helix	50	71	0.91
Cytoplasmic	72	215	0.69
Transmembrane Helix	216	233	0.33
Non-Cytoplasmic	234	506	0.55